September 9th (Sat)

•   8:30 Meet up at the hotel lobby
•   9:00 Registration opens / Coffee
• 10:00 Introduction and special talks

10:00-10:10	Welcome address
	Toshihisa Takagi National Bioscience Database Center, Japan
10:10-10:30	Introduction to the 10th BioHackathon
	Toshiaki Katayama Database Center for Life Science, Japan
10:30-11:00	Tohoku Medical Megabank Project: Large-Scale Genome Cohort Study
	Atsushi Shimizu Iwate Tohoku Medical Megabank Organization, Iwate Medical University, Japan
11:00-11:30	UniProt: a decade on the semantic web, challenges and successes
	Jerven Bolleman Swiss Institute of Bioinformatics (SIB), Switzerland
11:30-12:00	10 Years of the BioHackathon and the Future
	Panel discussion Panelist: TBA

• 12:00 Lunch
• 13:20 Talks (15min + 5min for questions)

13:20-13:40	Advances in PubChem data linking: towards knowledge discovery
	Evan Bolton National Center for Biotechnology Information (NCBI), USA
13:40-14:00	Updates from the EBI RDF platform
	Thomas Liener European Bioinformatics Institute (EMBL-EBI), UK
14:00-14:20	Agrisemantics: harnessing the Semantic Web technologies for the benefit of Agriculture, Food and Nutrition
	Erick Antezana Norwegian University of Science and Technology (NTNU), Norway / Bayer CropScience, Belgium
14:20-14:40	Glycomics@ExPASy
	Julien Mariethoz Swiss Institute of Bioinformatics (SIB), Switzerland

• 14:40 Coffee break
• 15:20 Talks (15min + 5min for questions)

15:20-15:40	Enabling practical pan-genomics with the variation graph toolkit
	Erik Garrison Wellcome Trust Sanger Institute, UK
15:40-16:00	The Human Genome Variation Map
	Adam Novak University of California, Santa Cruz, Genomics Institute, USA
16:00-16:20	A Graph Genome Browser
	Toshiyuki Yokoyama The University of Tokyo, Japan

• 16:20 DBCLS 10th Anniversary Track

16:20-16:40	Greetings from DBCLS director
	Yuji Kohara Database Center for Life Science, Japan  Asao Fujiyama Research Organization of Information and Systems, Japan  Susumu Goto Database Center for Life Science, Japan

16:40-16:45	NBDC RDF portal
	Shuichi Kawashima Database Center for Life Science, Japan

16:45-16:50	Umaka Suite
	Yasunori Yamamoto Database Center for Life Science, Japan

16:50-16:55	LOD Surfer: a search tool based on class-class relationships on LOD
	Atsuko Yamaguchi Database Center for Life Science, Japan

16:55-17:00	SPANG: a SPARQL client for generating and reusing queries
	Hirokazu Chiba Database Center for Life Science, Japan

17:00-17:05	Standardize experimental protocol description for reproducible science
	Tazro Ohta Database Center for Life Science, Japan

17:05-17:10	Facilitating the use of public high-throughput sequencing data for omics research
	Hidemasa Bono Database Center for Life Science, Japan

17:10-17:15	Linking Literature Resources with Data
	Jin-Dong Kim Database Center for Life Science, Japan

17:15-17:20	PubCaseFinder: a diagnosis assistant tool for rare diseases using published case reports
	Toyofumi Fujiwara Database Center for Life Science, Japan

17:20-17:30	Questions for Lightning Talks

• 17:30 Group photo, Move to the Reception venue
• 18:00 Reception Party

September 10th (Sun)

•   9:00 Registration opens / Coffee
•   9:30 Announcements
•   9:40 Talks (15min + 5min for questions)

9:40-10:05	Hacking Data Interoperability - FAIR outcomes from BioHack 2015 & 2016.
	Mark Wilkinson Centre for Plant Biotechnology and Genomics (CBGP UPM-INIA), Spain
10:05-10:20	Advancing Biomedical Knowledge Reuse with FAIR
	Michel Dumontier Institute of Data Science, Maastricht University, Netherlands
10:20-10:40	Making GeneNetwork FAIR and creating a Journal of Open Data
	Pjotr Prins University Medical Center Utrecht, Netherlands & University of Tennessee Health Science Center, US
10:40-11:00	BioThings and SmartAPI: building an ecosystem of interoperable biological knowledge APIs
	Chunlei Wu The Scripps Research Institute (TSRI), USA
11:00-11:20	Integrating Glycoinformatics with Public Web Resources
	Kiyoko F. Aoki-Kinoshita Soka University, Japan
11:20-11:40	Linking ecological ontologies to the Sustainable Development Agenda for 2030
	Pier Luigi Buttigieg Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research (AWI), Germany
11:40-12:00	MicrobeDB.jp: integrating microbial genome and metagenome data using semantic web technology
	Hiroshi Mori National Institute of Genetics, Japan

• 12:00 Lunch
• 13:20 Talks (15min + 5min for questions)

13:20-13:40	The ExAC Browser: Displaying reference data information from over 60,000 exomes
	Konrad Karczewski Broad Institute, USA
13:40-14:00	Clinical Deep Phenotyping and its applications
	Tudor Groza Kinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Australia
14:00-14:20	Discovery over a NGLY1 deficiency knowledge graph
	Núria Queralt-Rosinach The Scripps Research Institute (TSRI), USA
14:20-14:40	Building and Application of AMED's Genomic Variation Database
	Hiroyuki Mishima Nagasaki University, Japan

• 14:40 Coffee break
• 15:20 Talks (15min + 5min for questions)

15:20-15:40	Citation Graph Visualization, or how to tackle the publication avalanche (with Wikidata)
	Sebastian Burgstaller-Muehlbacher The Scripps Research Institute (TSRI), USA
15:40-16:00	Learning from linked data, ontologies, and text
	Robert Hoehndorf King Abdullah University of Science and Technology (KAUST), Saudi Arabia
16:00-16:20	Integrating text-mined assertions into the Knowledge Base of Biology
	Bill Baumgartner University of Colorado Denver, USA

• 16:20 Lightning Talks (5mins)

16:20-16:25	Linked experimental protocols
	Alexander Garcia Universidad Politecnica de Madrid, Spain

16:25-16:30	A SmartAPI for Spontaneous Reporting Systems
	Juan Banda Stanford University, USA

16:30-16:35	BioRuby
	Naohisa Goto Research Institute for Microbial Diseases (RIMD), Osaka University, Japan

16:35-16:40	Bioschemas
	Leyla Jael Garcia Castro European Bioinformatics Institute (EMBL-EBI), UK

16:40-16:45	Storing and Querying Evolutionary Relationships Among Millions of Genes in the Orthologous Matrix (OMA) Using RDF
	Tarcisio Mendes de Farias University of Lausanne (DEE - UNIL) / Swiss Institute of Bioinformatics (SIB), Switzerland

16:45-16:50	minialign: fast and accurate alignment tool for PacBio and Nanopore long reads
	Hajime Suzuki Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, the University of Tokyo, Japan

16:50-16:55	Noctua, models, and the greater web
	Seth Carbon Lawrence Berkeley National Laboratory (LBL), USA

16:55-17:00	Databases for RNA Expression Analysis
	David Steinberg University of California, Santa Cruz, Genomics Institute, USA

17:00-17:05	Structured data for patient matchmaking
	Orion Buske Hospital for Sick Children (SickKids), Canada

17:05-17:10	Linked ICGC - Cancer Genome RDF Data and its Usage
	Ryota Yamanaka Oracle Corporation Japan, Japan

17:10-17:15	Leveraging Biomedical LOD Resources to Annotate the Function of Uncharacterized Disease-Associated Genes
	Tiffany Callahan University of Colorado Denver | Anschutz Medical Campus (AMC), USA

17:15-17:20	Deep Learning to mobilize trait data from multimodal data sources
	Claus Weiland Senckenberg Data & Modelling Centre (SGN), Germany

17:20-17:25	Single Cell and Linked Data
	Raoul Jean Pierre Bonnal Fondazione Istituto Nazionale Genetica Molecolare (INGM), Italy

17:25-17:30	Questions for Lightning Talks